PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CA02g03480
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Capsiceae; Capsicum
Family WRKY
Protein Properties Length: 446aa    MW: 49194.4 Da    PI: 5.9385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CA02g03480genomePEPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87.2e-31217275259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  CA02g03480 217 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 275
                 699************************998****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081132.787211277IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-31213277IPR003657WRKY domain
SuperFamilySSF1182903.53E-26215277IPR003657WRKY domain
SMARTSM007741.4E-37216276IPR003657WRKY domain
PfamPF031069.4E-26218275IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MCSPQKDMTN NYQGDLADIF RGGNSTTSGD QSSTSVVPVP DGWQFPSINY SASVIEEPTA  60
SLVQDFGDPF CNLRDPLLFH DLDMIPQASS SLFNPTQENN NHFGPNIDSP SMKIRRPNIF  120
STMLQISPTT KLAMSPCDIA CSSPNSNVNV IGALVPTQDA IISPNSSKTC LVENSGLQIS  180
SPRNTGIKRR KSQAKKVVCI PAPAPANSRQ GGEVVPSDLW AWRKYGQKPI KGSPYPRGYY  240
RCSSSKGCSA RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PNNSKHTTTS  300
KNNTNIMPNN SQYQGDTSFN EDEQNERNIN HDNNVAQANI STYPKVKEEV AEEDLQQQLG  360
EMRNVEFSKG SYQPILPDSS NQCHEDFFAD LVELEADPLN FLFANTLSGD INEVGQKKAI  420
DAFNLYNWSK DRNTNINNKG TQADT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-172152771374WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754412e-76HG975441.1 Solanum pennellii chromosome ch02, complete genome.
GenBankHG9755142e-76HG975514.1 Solanum lycopersicum chromosome ch02, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016557980.10.0PREDICTED: probable WRKY transcription factor 14
TrEMBLM1B7Q50.0M1B7Q5_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000390610.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.18e-85WRKY DNA-binding protein 35